Main Page

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	GoogleSearch

News & Updates Warren News about Warren DeLano's passing may be read on Warren's memorial page. PyMOLWiki Reformatted Main Page. Some delays might occur from resizing images, but that should go away once the images are cached. PyMOLWiki New — Search the PyMOLWiki via GoogleSearch PyMOL PyMOL is known to work under Mac OS X 10+ (Snow Leopard) using the new Fink and incentive builds. See Installing PyMOL under Fink. PyMOL PyMOL now has a Set command for basic settings, and a Set_bond command for bond-only settings. PyMOL Space— new command to control PyMOL's usage of color spaces.

Did you know... Count molecules in selection = Overview = This script will return the number of distinct molecular objects in a given selection. If no selection is given, the script assumes "sele" the named mouse selection. Example <source lang="python"> run the script run count_molecules_in_sel.py grab a protein from the PDB fetch 2f56, async=0 select all the urea molecules select resn URE should count 11 molecules count ..→

A Random PyMOL-generated Cover. See Covers. Random PyMOL-generated Journal Cover