Main Page

hosted by

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates Python 3 New Python 3 compatibility guide for scripts and plugins Official Release PyMOL v2.3 has been released on February 11, 2019. POSF New PyMOL fellows announced for 2018-2019 Tutorial Plugins Tutorial updated for PyQt5 New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures. Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... Cyspka Type Python Script Download scripts/cyspka.py Author(s) Troels E. Linnet License BSD This code has been put under version control in the project Pymol-script-repo Introduction This script is an experimental surface cysteine pKa predictor. The script is solely based on the work by: Predicting Reactivities of Protein Surface Cysteines as Part of a Strategy for Selective Multiple Labeling. Maik H. Jacob, Dan Amir, Vladimir Ratner, Eugene Gussakowsky, and Elisha Haas. Biochemistry. Vol 44, p. 13664-13672, doi:10.1021/bi051205t Questions to the article should be send to Maik Jacob. Overview The authors Jacob et al. were able to describe a computational algorithm that could predict the reactivity of surface cysteines. The algorithm was based on reaction rates with Ellmans reagent, Riddles et al., on 26 single cysteine mutants of adenylate kinase. The authors could predict the reactivity of the ..→

A Random PyMOL-generated Cover. See Covers.