Main Page

hosted by

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates POSF New PyMOL fellows announced for 2018-2019 Tutorial Plugins Tutorial updated for PyQt5 Official Release PyMOL v2.2 has been released on July 24, 2018. New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures. Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... Pymol2glmol Type Python Script Download scripts/pymol2glmol.py Author(s) Takanori Nakane License LGPL3 This code has been put under version control in the project Pymol-script-repo Introduction A script to export a scene in pymol to GLmol. GLmol is a molecular viewer for Web browsers written in WebGL/Javascript. With pymol2glmol, you can publish your pymol scene to a Web page. Visitors can rotate, zoom the molecule on the page. Compared to export of polygon coordinates (VRML or Object3D), the published web page contain only atomic coordinates so that the file size is much smaller and visitors can even change representation. Examples and script can be downloaded from my web page. This script uses cmd.get_session to extract which representations is enabled on each part of the molecule. I think this technique is useful for many purposes, for example, writing exporters, copying representations between aligned structures, etc. Comments and suggestions are ..→

A Random PyMOL-generated Cover. See Covers.