B2transparency: Difference between revisions
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{{Infobox script-repo | {{Infobox script-repo | ||
|type = module | |type = module | ||
|filename = b2transparency.py | |filename = scripts/b2transparency.py | ||
|author = [[User:Speleo3|Thomas Holder]] | |author = [[User:Speleo3|Thomas Holder]] | ||
|license = BSD-2-Clause | |license = BSD-2-Clause | ||
Latest revision as of 21:31, 22 June 2025
| Type | Python Module |
|---|---|
| Download | scripts/b2transparency.py |
| Author(s) | Thomas Holder |
| License | BSD-2-Clause |
| This code has been put under version control in the project Pymol-script-repo | |
b2transparency can set transparency settings like transparency or sphere_transparency for each atom scaled by b-factor (or any other numeric atomic property).
Usage
b2transparency [ selection [, setting [, minimum [, maximum [, var ]]]]]
Example
# some dummy molecule with increasing b-factor along the chain
fab AAAAAAAAAAAAA
alter all, b=resv
b2transparency all
as sticks
show surface
set surface_color, gray