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== | __NOTOC__ | ||
{| align="center" width="100%" style="background: #B22222; margin-bottom: 4em; border-bottom: 1px solid #B22222; border-left: 1px solid #B22222; border-right: 1px solid #B22222;" | |||
|+ style="font-size: 1.0em; font-weight: normal; color: #FFFFFF; text-align:right; background: #B22222; padding-top:0.5em; padding-bottom: 0.25em; padding-right: 0.60em; border-top: 2px solid #B22222; border-bottom: 1px solid #fff;" |hosted by [[File:SBGridlogo2.jpg|140 px|link=https://sbgrid.org/]] | |||
|} | |||
{| align="center" style="padding-bottom: 3em;" | |||
|+ style="font-size:210%; font-weight: bold; color:#000000; text-align:center; padding: 5px; margin-bottom: 4px;" | Welcome to the PyMOL Wiki! | |||
|- style="text-align:center; font-weight: normal; color: #000000; font-size: 120%; font-family: sans-serif;" | |||
| The community-run support site for the [http://pymol.org PyMOL] molecular viewer. | |||
|- style="text-align:center; font-weight:normal; color: #000000; font-size: 120%; font-family: sans-serif;" | |||
| To request a new account, email SBGrid at: accounts (@) sbgrid dot org | |||
|- style="text-align:center; font-weight:bold; color: #000000; font-size: 120%; font-family: sans-serif;" | |||
|} | |||
=== | {| align="center" width="45%" style="background: #FFFFFF; margin-bottom: 4em; border-bottom: 1px solid #AFB29E; border-left: 1px solid #AFB29E; border-right: 1px solid #AFB29E;" | ||
|+ style="font-size: 1.4em; font-weight: bold; color: #FFFFFF; text-align:center; background: #000000; padding-top:0.5em; padding-bottom: 0.25em; border-top: 2px solid #000000; border-bottom: 1px solid #fff;" |Quick Links | |||
|- | |||
| style="font-size: 1.1em; font-weight: normal; color #48A2B4; padding: 0.5em 1em 0.5em 3em;"|'''[[:Category:Tutorials|Tutorials]]''' || '''[[TOPTOC|Table of Contents]]''' || '''[[:Category:Commands|Commands]]''' | |||
|- | |||
| style="font-size: 1.1em; font-weight: normal; color #48A2B4; padding: 0.5em 1em 0.5em 3em;"|'''[[:Category:Script_Library|Script Library]]''' || '''[[:Category:Plugins|Plugins]]''' || '''[[:Category:FAQ|FAQ]]''' | |||
|- | |||
| style="font-size: 1.1em; font-weight: normal; color #48A2B4; padding: 0.5em 1em 0.5em 3em;"|'''[[Gallery]]''' | '''[[Covers]]''' | |||
||'''[[CheatSheet|PyMOL Cheat Sheet]]''' (''[[Media:PymolRef.pdf|PDF]]'') | |||
||'''[[PyMOL_mailing_list|Getting Help]]''' | |||
|} | |||
{| width="100%" | |||
| style="vertical-align: top; width: 40%" | | |||
{| class="jtable" style="float: left; width: 90%;" | |||
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates | |||
* | |- | ||
! Official Release | |||
| [https://pymol.org PyMOL v3.0 has been released] on March 12, 2024. | |||
|- | |||
! New Plugin | |||
| [[CavitOmiX|CavitOmiX]] calculate [https://innophore.com Catalophore™ cavities], predict protein structures with [https://www.nvidia.com/en-us/gpu-cloud/bionemo OpenFold by NVIDIA-BioNeMo], [https://ai.facebook.com/blog/protein-folding-esmfold-metagenomics/ ESMFold] and retrieve [https://www.deepmind.com/research/highlighted-research/alphafold Alphafold] models | |||
|- | |||
! Official Release | |||
| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021. | |||
|- | |||
! Python 3 | |||
| New [[2to3|Python 3 compatibility guide]] for scripts and plugins | |||
|- | |||
! POSF | |||
| [https://pymol.org/fellowship New PyMOL fellowship announced for 2022-2023] | |||
|- | |||
! Tutorial | |||
| [[Plugins Tutorial]] updated for PyQt5 | |||
|- | |||
! New Plugin | |||
| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe | |||
|- | |||
! Selection keywords | |||
| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]! | |||
|- | |||
! Plugin Update | |||
| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL | |||
|- | |||
! New Script | |||
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons | |||
|- | |||
! Older News | |||
| See [[Older_News|Older News]]. | |||
|} | |||
|style="vertical-align: top; width: 40%"| | |||
{| class="jtable" style="float: right; width: 90%" | |||
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" |Did you know... | |||
|- | |||
|<div class="didyouknow" > | |||
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category=Commands|Plugins|Script_Library|Settings | |||
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<div style="clear: both;"></div> | |||
|} | |||
| | |||
|style="vertical-align: top; width: 18%"| | |||
<DynamicPageList> | |||
imagecontainer=Covers | |||
randomcount=1 | |||
escapelinks=false | |||
openreferences=true | |||
listseparators=[[,%PAGE%,|thumb|185px|A Random PyMOL-generated Cover. See [[Covers]].]],\n | |||
ordermethod=none | |||
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</DynamicPageList> | |||
|} | |||
Latest revision as of 12:54, 12 March 2024
The community-run support site for the PyMOL molecular viewer. |
To request a new account, email SBGrid at: accounts (@) sbgrid dot org |
Tutorials | Table of Contents | Commands |
Script Library | Plugins | FAQ |
Gallery | Covers | PyMOL Cheat Sheet (PDF) | Getting Help |
|
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