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{{Infobox script-repo | {{Infobox script-repo | ||
|type = module | |type = module | ||
|filename = show_bumps.py | |filename = scripts/show_bumps.py | ||
|author = [[User:Speleo3|Thomas Holder]] | |author = [[User:Speleo3|Thomas Holder]] | ||
|license = BSD-2-Clause | |license = BSD-2-Clause | ||
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show_bumps [ selection [, name ]] | show_bumps [ selection [, name ]] | ||
== Related Settings == | |||
* sculpt_vdw_vis_max (default: 0.3) | |||
* sculpt_vdw_vis_mid (default: 0.1) | |||
* sculpt_vdw_vis_min (default: -0.1) | |||
[[Category:Script_Library]] | [[Category:Script_Library]] | ||
[[Category:Pymol-script-repo]] | [[Category:Pymol-script-repo]] |
Latest revision as of 23:11, 22 June 2025
Type | Python Module |
---|---|
Download | scripts/show_bumps.py |
Author(s) | Thomas Holder |
License | BSD-2-Clause |
This code has been put under version control in the project Pymol-script-repo |
The red discs in the image below show vdW overlaps or steric clashing. This script will create those bumps for your chosen molecule.
This is a script to visualize VDW clashes, just like the mutagenesis wizard does.
Posted on pymol-users mailing list.
Usage
show_bumps [ selection [, name ]]
Related Settings
- sculpt_vdw_vis_max (default: 0.3)
- sculpt_vdw_vis_mid (default: 0.1)
- sculpt_vdw_vis_min (default: -0.1)