Show bumps: Difference between revisions

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(moved to github)
(Related Settings)
 
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|license  = BSD-2-Clause
|license  = BSD-2-Clause
}}
}}
The red discs in the image below show vdW overlaps or steric clashing. This script will create those bumps for your chosen molecule.
[[Image:sb.png|300px]]


This is a script to visualize VDW clashes, just like the [[mutagenesis]] wizard does.
This is a script to visualize VDW clashes, just like the [[mutagenesis]] wizard does.
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  show_bumps [ selection [, name ]]
  show_bumps [ selection [, name ]]
== Related Settings ==
* sculpt_vdw_vis_max (default: 0.3)
* sculpt_vdw_vis_mid (default: 0.1)
* sculpt_vdw_vis_min (default: -0.1)


[[Category:Script_Library]]
[[Category:Script_Library]]
[[Category:Pymol-script-repo]]
[[Category:Pymol-script-repo]]

Latest revision as of 03:21, 1 July 2012

Type Python Module
Download show_bumps.py
Author(s) Thomas Holder
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

The red discs in the image below show vdW overlaps or steric clashing. This script will create those bumps for your chosen molecule.

Sb.png

This is a script to visualize VDW clashes, just like the mutagenesis wizard does.

Posted on pymol-users mailing list.

Usage

show_bumps [ selection [, name ]]

Related Settings

  • sculpt_vdw_vis_max (default: 0.3)
  • sculpt_vdw_vis_mid (default: 0.1)
  • sculpt_vdw_vis_min (default: -0.1)