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News & Updates New Script save_settings can dump all changed settings to a file Tips & Tricks Instructions for generating 3D PDFs using PyMOL. Wiki Update Wiki has been updated. Please report any problems to the sysops. New Scripts Create objects for each molecule or chain in selection with split_object and split_chains New Script Rotkit: is a collection of usefull scripts to place your dye/molecule where you want. It includes a very handy, rotation around line, function. New Script Forster-distance-calculator: Can be used as a pymol-python shortcut to calculate the Förster distance between dyes from different companies. Useful, if the user have pymol installed, but not python. This script is meant as a tool to finding the right dyes, when labelling suitable positions for the site-directed cysteine mutants. See DisplacementMap. New Script propka: Fetches the pka values for your protein from the propka server. propka generates a pymol command file that make pka atoms, color and label them according to your protein. Inspection is made easy by grouping the pka atoms in the pymol menu. Older News See Older News.

Did you know... Format bonds Type Python Module Download scripts/format_bonds.py Author(s) Andreas Warnecke License BSD-2-Clause This code has been put under version control in the project Pymol-script-repo The script format_bonds will automatically format bonds in amino acids. Usage format_bonds [ selection [, bonds ]] Examples <gallery heights="150px" widths="150px" align="center" perrow="3"> Image:PHE_valence_0.png|format_bonds bonds=1 Image:PHE_valence_1_mode_1.png| ..→

A Random PyMOL-generated Cover. See Covers.