Gallery: Difference between revisions
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{| align="center" | {| align="center" | ||
|+ style=" | |+ style="font-size:190%; font-weight: bold; color:#038; padding-bottom: 15px;" |PyMOLWiki Gallery | ||
|- style="text-align:center; font-weight: bold; font-size:120%; color:#333;" | |- style="text-align:center; font-weight: bold; font-size:120%; color:#333;" | ||
| Cool PyMOL-generated Images and their Scripts.<br/><br/>''[[Talk:Gallery#Adding|Add Your Own]]'' | | Cool PyMOL-generated Images and their Scripts.<br/><br/>''[[Talk:Gallery#Adding|Add Your Own]]'' | ||
|- | |||
|} | |} | ||
| Line 66: | Line 67: | ||
*[[surface_color]] | *[[surface_color]] | ||
*[[surface_type]] | *[[surface_type]] | ||
}} | |||
{{GalleryImage | |||
|image=QuteMolLike.png|size=400px|title=Cool Perspective|description=QuteMol like image--modern ''feel'' to it. | |||
|cmdString=<source lang="python"> | |||
load $TUT/1hpv.pdb | |||
set_color oxygen, [1.0,0.4,0.4] | |||
set_color nitrogen, [0.5,0.5,1.0] | |||
remove solvent | |||
as spheres | |||
util.cbaw | |||
bg white | |||
set light_count,10 | |||
set spec_count,1 | |||
set shininess, 10 | |||
set specular, 0.25 | |||
set ambient,0 | |||
set direct,0 | |||
set reflect,1.5 | |||
set ray_shadow_decay_factor, 0.1 | |||
set ray_shadow_deday_range, 2 | |||
unset depth_cue | |||
# for added coolness | |||
# set field_of_view, 60 | |||
ray | |||
</source> | |||
|seeAlso= | |||
*[[Load]] | |||
*[[Set_color]] | |||
*[[Remove]] | |||
*[[Solvent]] | |||
*[[As]] | |||
*[[Util]] | |||
*[[Util.cbaw]] | |||
*[[Bg]] | |||
*[[Light_Count]] | |||
*[[Spec_Count]] | |||
*[[Shininess]] | |||
*[[Specular]] | |||
*[[Ambient]] | |||
*[[Direct]] | |||
*[[Reflect]] | |||
*[[Ray_shadow_decay_factor]] | |||
*[[Ray_shadow_decay_range]] | |||
*[[Unset]] | |||
*[[depth_cue]] | |||
*[[Ray]] | |||
*[[Set]] | |||
*[[Property_Selectors |Short form Selectors]] | |||
}} | }} | ||
Revision as of 16:59, 18 June 2008
| Cool PyMOL-generated Images and their Scripts. Add Your Own |
| Grid Mode | What To Type | |||||
|
fetch 1cll 1sra 1ggz 5pnt 1rlw 1cdy;
set grid_mode
|
| Cool Perspective | What To Type | |||||
|
load prot.pdb;
zoom i. 46-49 and n. CA
set field_of_view, 60
ray
|
| Representing a binding pocket | What To Type | |||||
|
load $TUT/1hpv.pdb, tmp
extract lig, organic
extract prot, polymer
delete tmp
set surface_carve_cutoff, 4.5
set surface_carve_selection, lig
set surface_carve_normal_cutoff, -0.1
show surface, prot within 8 of lig
set two_sided_lighting
set transparency, 0.5
show sticks, lig
orient lig
set surface_color, white
set surface_type, 2 # mesh
unset ray_shadows
|
| Cool Perspective | What To Type | |||||
|
load $TUT/1hpv.pdb
set_color oxygen, [1.0,0.4,0.4]
set_color nitrogen, [0.5,0.5,1.0]
remove solvent
as spheres
util.cbaw
bg white
set light_count,10
set spec_count,1
set shininess, 10
set specular, 0.25
set ambient,0
set direct,0
set reflect,1.5
set ray_shadow_decay_factor, 0.1
set ray_shadow_deday_range, 2
unset depth_cue
# for added coolness
# set field_of_view, 60
ray
|
