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|+ style="width: 90%; font-size:190%; font-weight: bold; color:#038; text-align:center; padding: 5px; margin-bottom: 15px; colspan:4" | PyMOLWiki Gallery | |+ style="width: 90%; font-size:190%; font-weight: bold; color:#038; text-align:center; padding: 5px; margin-bottom: 15px; colspan:4" | PyMOLWiki Gallery | ||
|- style="text-align:center; font-weight: bold; font-size:120%; color:#333;" | |- style="text-align:center; font-weight: bold; font-size:120%; color:#333;" | ||
| Cool PyMOL-generated Images and their Scripts | | Cool PyMOL-generated Images and their Scripts.<br/><br/>''[[Talk:Gallery#Adding|Add Your Own]]'' | ||
|} | |} | ||
Revision as of 13:27, 1 June 2008
| Cool PyMOL-generated Images and their Scripts. Add Your Own |
| Grid Mode | What To Type | |||||
|
fetch 1cll 1sra 1ggz 5pnt 1rlw 1cdy;
set grid_mode
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| Cool Perspective | What To Type | |||||
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load prot.pdb;
zoom i. 46-49 and n. CA
set field_of_view, 60
ray
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| Representing a binding pocket | What To Type | |||||
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load $TUT/1hpv.pdb, tmp
extract lig, organic
extract prot, polymer
delete tmp
set surface_carve_cutoff, 4.5
set surface_carve_selection, lig
set surface_carve_normal_cutoff, -0.1
show surface, prot within 8 of lig
set two_sided_lighting
set transparency, 0.5
show sticks, lig
orient lig
set surface_color, white
set surface_type, 2 # mesh
unset ray_shadows
|
