Gallery: Difference between revisions
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{{GalleryImage | {{GalleryImage | ||
| | |image=Pocket.png|size=200px|title=Representing a binding pocket|description=This image shows a nice way to show binding surfaces | ||
|cmdString=<source lang="python"> | |cmdString=<source lang="python"> | ||
load $TUT/1hpv.pdb, tmp | load $TUT/1hpv.pdb, tmp | ||
Revision as of 12:30, 31 May 2008
| Cool PyMOL-generated Images and their Scripts |
| Grid Mode | What To Type | |||||
|
fetch 1cll 1sra 1ggz 5pnt 1rlw 1cdy;
set grid_mode
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| Cool Perspective | What To Type | |||||
|
load prot.pdb;
zoom i. 46-49 and n. CA
set field_of_view, 60
ray
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| Representing a binding pocket | What To Type | |||||
|
load $TUT/1hpv.pdb, tmp
extract lig, organic
extract prot, polymer
delete tmp
set surface_carve_cutoff, 4.5
set surface_carve_selection, lig
set surface_carve_normal_cutoff, -0.1
show surface, prot within 8 of lig
set two_sided_lighting
set transparency, 0.5
show sticks, lig
orient lig
set surface_color, white
set surface_type, 2 # mesh
unset ray_shadows
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