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Revision as of 07:08, 24 December 2022

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Quick Links
Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery \| Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates
New Plugin	CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release	PyMOL v2.5 has been released on May 10, 2021.
Python 3	New Python 3 compatibility guide for scripts and plugins
POSF	New PyMOL fellowship announced for 2022-2023
Tutorial	Plugins Tutorial updated for PyQt5
New Plugin	PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...

Ribbon color

==Overview==

Ribbon_color allows one to explicitly state the color to be applied to a ribbon object.

Syntax

# set it to a color
set ribbon_color, color

# examples:
# default auto-cycles the color for each new object
set ribbon_color, marine

# apply green to the ribbon only for object obj01
set ribbon_color, green /obj01

# apply orange to the ribbon only for chain B of object obj01; NB: not fully enabled until version 1.0
set ribbon_color, orange /obj01//B

Examples

ribbon_color green
ribbon_color marine
two chains in same object with different colors

Advanced details

Some notes on general Set syntax (From PyMOL "help set"):

DESCRIPTION

  "set" changes one of the PyMOL state variables,

USAGE

  set name, [,value [,object-or-selection [,state ]]]

  set name = value  # (DEPRECATED)

PYMOL API

  cmd.set ( string name, string value=1,
            string  ..→

A Random PyMOL-generated Cover. See Covers.

@@ Line 30: / Line 30: @@
 |-
 ! New Plugin
-| [[CavitOmiX|CavitOmiX]] calculate [https://innophore.com Catalophore™ Cavities], predict protein structures with [https://www.nvidia.com/en-us/gpu-cloud/bionemo OpenFold by NVIDEA-BioNeMo], [https://ai.facebook.com/blog/protein-folding-esmfold-metagenomics/ ESMFold] and retrieve [https://www.deepmind.com/research/highlighted-research/alphafold Alphafold] models
+| [[CavitOmiX|CavitOmiX]] calculate [https://innophore.com Catalophore™ cavities], predict protein structures with [https://www.nvidia.com/en-us/gpu-cloud/bionemo OpenFold by NVIDIA-BioNeMo], [https://ai.facebook.com/blog/protein-folding-esmfold-metagenomics/ ESMFold] and retrieve [https://www.deepmind.com/research/highlighted-research/alphafold Alphafold] models
 |-
 ! Official Release