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! Official Release
! Official Release
| [http://pymol.org|PyMOL, AxPyMOL, and JyMO v1.7 have all been released] today, January 14, 2014.
| [http://pymol.org PyMOL, AxPyMOL, and JyMO v1.7 have all been released] today, January 14, 2014.
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! New Plugin
! New Plugin
| [[Bondpack]] is a a collection of PyMOL plugins for easy visualization of atomic bonds.
| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
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! New Plugin
! New Plugin

Revision as of 15:59, 14 January 2014

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
Official Release PyMOL, AxPyMOL, and JyMO v1.7 have all been released today, January 14, 2014.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

Map Trim

Map Trim introduced in PyMol 0.99beta11, gives the user the ability to cut out a section of a map and read it back in as a completely new map. This was not previously possible prior to 0.99beta11. (Windows build at PyMol Beta or compile from source).

Usage

map_trim map-name, selection-name, buffer

Combined with the convenient new object-name wildcards (!!!), you could for example trim all your maps to 3 Angstroms around ligands with one commmand as follows

map_trim *, organic, 3

With map size now reduced, the map_double command can come in handy to increase mesh density on your figure.

map_double *
A Random PyMOL-generated Cover. See Covers.