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News & Updates Official Release PyMOL, AxPyMOL, and JyMO v1.7 have all been released] today, January 14, 2014. New Plugin Bondpack is a a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS. New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL. New Script cgo_arrow draws an arrow between two picked atoms. Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL. Older News See Older News.

Did you know... Lisica Type PyMOL Plugin Download plugins/lisica.py Author(s) Janez Konc License This code has been put under version control in the project Pymol-script-repo Important Currently, the most recent version can be obtained at the Insilab web page. Description LiSiCA is a software for 2D and 3D ligand based virtual screening. It uses a fast maximum clique algorithm to find two- and three- dimensional similarities between reference compound and a database of target compounds in Mol2 format. The similarities are expressed using Tanimoto coefficients and the target compounds are ranked accordingly. LiSiCA is developed and maintained at National Institute of Chemistry, Slovenia. LiSiCA Plugin is free for Academic (NON-COMMERCIAL) use. However, for COMMERCIAL use the potential users have to write to Janez Konc. LiSiCA Plugin Features Graphical User Interface which facilitate the choice of parameters for LiSiCA. Results displayed according to the ranking in similarities as ..→

A Random PyMOL-generated Cover. See Covers.