View source for Sst

{{Infobox psico
|module    =  psico.editing
}}

[[sst]] is a wrapper for the [http://lcb.infotech.monash.edu.au/sstweb2/ SST secondary structural assignment web service]. The command updates PyMOL's '''ss''' atom property.

SST does minimum message length inference of secondary structure based on C-alpha atom positions.

== Usage ==

 sst [ selection [, raw [, state ]]]

== Arguments ==

* '''selection''' = str: atom selection {default: all}
* '''raw''' = str: [[iterate#Exposed_Variables|atom property]] to assign the sst secondary structure type to. This type will also be translated to PyMOL's H/S/L types and assiged to the '''ss''' property {default: }
* '''state''' = int: object state {default: -1 (current state)}

== Example ==

 import psico.editing
 fetch 1ubq, async=0
 
 sst all, raw=custom
 as cartoon
 
 color gray
 spectrum custom, selection=guide
 set cartoon_discrete_colors, 1
 label guide, custom

== See Also ==

* [[dssp]]
* [[dss]]

[[Category:Script Library]]
[[Category:Structural_Biology_Scripts]]