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set_symmetry selection, a, b, c, alpha, beta, gamma, spacegroup ===PYMOL API===

...tain commands. Turning this on, should [[:Category:Performance|speed]] up PyMOL in general.

'''cartoon_flat_sheets''' determines how smooth PyMol draws the beta sheets. Flat sheets make for a nice artistic image, however sometime there

...ible prior to 0.99beta11. (Windows build at [http://delsci.com/beta PyMol Beta] or compile from source).

Warren released some information about the new PyMol, 0.99beta11. out is "map_trim". (Windows build at http://delsci.com/beta or compile

* The unit cell angles (alpha, beta, gamma) ===PYMOL API===

PyMOL's selection language allows to select atoms based on identifiers and proper PyMOL>show spheres, solvent and chain A

...] is primarily a plugin for creating and manipulating molecular models of β-peptides, but works for α-peptides as well. In other words, the [[Fa ...ha/pmlbeta/-/raw/binaries/pmlbeta_latest.zip pmlbeta_latest.zip] using the PyMOL [[Plugin Manager]]

...tion-expressions stand for lists of atoms in arguments that are subject to PyMOL commands. You can name the selections to facilitate their re-use, or you ca ...n the PDB, and the identifier gives the name (ca for alpha carbons, cb for beta carbons, etc). A handful of selection-expressions don't require identifiers

With PyMOL, heavy emphasis is placed on cartoon aesthetics, and so both hydrogen bondi ...fewer helix/sheet residues, except for partially distorted helices, which PyMOL tends to tolerate.

All information on this page is below subject to change during PyMOL3 beta (and beyond). and to register this program to PyMOL:

...gin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. * New Plugin: [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.

The [[Label]] command controls how PyMOL draws text labels for PyMOL objects. ...t; you can even use Unicode fonts for special symbols like, <math>\alpha, \beta, \pm, \textrm{\AA}</math>, etc.

...ed with the identical portion of your model (let's say where the C alpha-C beta bond leaves the ribbon backbone) on both the LEFT and RIGHT images. Repeat from pymol import cmd

* dash (8) ''(new in PyMOL 1.8.2)'' ===PYMOL API===

Note: CEAlign is now built into PyMOL as a native command. See the open-source project page. This page is the home page of the open-source CEAlign PyMOL plugin. The CE algorithm is a fast and accurate protein structure alignmen

= PyMOL-created Journal Covers = Part of PyMOL's popularity comes from the fact that it is very flexible and it offers arb

This page describes how to install PyMOL on Linux. == Incentive PyMOL ==

|download = https://github.com/BIOS-IMASL/Azahar/archive/v0.8.8-beta.zip Azahar (pronounced /ɑːsɑːˈɑːr/) is a plugin that extends the PyMOL's capabilities to visualize, analyze and model glycans and glycoconjugated

to set residues 96-103 to beta Strand, alpha Helix, and Loop respectively. ...DB structure file, even if the '''CONECT''' records are missing. In fact, PyMOL guesses bonding connectivity based on proximity, based on the empirical obs