User contributions for Jaredsampson
Appearance
Results for Jaredsampson talk block log uploads logs
A user with 188 edits. Account created on 21 July 2009.
20 February 2025
- 14:5314:53, 20 February 2025 diff hist +74 Colorblindfriendly →Introduction: Credit Okabe and Ito for color palette, update link to reflect that the J*FLY page no longer exists (using an archive.org link instead).
19 January 2023
- 19:0919:09, 19 January 2023 diff hist −11 Get Title →PYMOL API: change to get_title API (this was apparently copied from the set_title page) current
- 19:0819:08, 19 January 2023 diff hist 0 Get Title →USAGE: fix typo in command name
15 February 2022
- 21:4121:41, 15 February 2022 diff hist +2 m CGO Shapes No edit summary current
14 February 2022
- 02:5302:53, 14 February 2022 diff hist +482 N Cgo transparency Add more details to usage and arguments current
- 02:4602:46, 14 February 2022 diff hist +56 CGO Shapes Add See Also section
- 02:4102:41, 14 February 2022 diff hist +4 CGO Shapes →EXAMPLES: fix missing namespace for cgo.CONE
- 02:3402:34, 14 February 2022 diff hist +18 CGO Shapes Add Category:CGO
- 02:3302:33, 14 February 2022 diff hist +19 CGO Shapes Add category:CGO
- 02:3102:31, 14 February 2022 diff hist +569 CGO Shapes →EXAMPLES: add image for the above examples
- 02:2602:26, 14 February 2022 diff hist +53 N File:Cgo examples.jpg Assorted rendered CGO objects in PyMOL. current
- 02:2002:20, 14 February 2022 diff hist +946 CGO Shapes Add examples and CONE
- 02:0402:04, 14 February 2022 diff hist +1,340 N CGO Shapes Create page
- 01:5001:50, 14 February 2022 diff hist +625 N Load CGO Create page current
25 March 2020
- 19:4619:46, 25 March 2020 diff hist +144 Pml →Basic usage: clarify about relative paths current
- 19:4519:45, 25 March 2020 diff hist +57 Pml →PyMOL Script: fix fixed-width formatting
- 19:4219:42, 25 March 2020 diff hist +14 Pml →Basic usage: fix fixed-width formatting
- 19:4019:40, 25 March 2020 diff hist +6 Pml →Python code: Italics
- 19:3919:39, 25 March 2020 diff hist +49 Pml →Python code: add syntax highlighting
- 19:3819:38, 25 March 2020 diff hist +21 N Collada Create redirect current Tag: New redirect
- 19:3419:34, 25 March 2020 diff hist +36 Pml →Handy commands to include in your scripts: add <code> tags
- 19:2919:29, 25 March 2020 diff hist +17 N PML create redirect current Tag: New redirect
- 19:2819:28, 25 March 2020 diff hist 0 m Pml Jaredsampson moved page PML to Pml without leaving a redirect: Consistent with other page names
- 19:2619:26, 25 March 2020 diff hist +1,889 Pml Add syntax and handy commands sections
- 16:4916:49, 25 March 2020 diff hist +60 Pml →PyMOL Script
- 16:4816:48, 25 March 2020 diff hist +439 N Pml Created page with basic description
- 16:3916:39, 25 March 2020 diff hist +8 Running Scripts →Python or Pymol?: Add link to PML page current
2 October 2019
- 17:3817:38, 2 October 2019 diff hist +23 Set Color Add link to missing set_object_color command page current
6 December 2018
- 04:0704:07, 6 December 2018 diff hist +36 File:4gms colors.png formatting for script current
- 04:0404:04, 6 December 2018 diff hist +1,015 N File:4gms colors.png Prepared in response to a pymol-users thread from 11/30/2018-12/5/2018 about the appearance of transparency in a published figure. Script to reproduce: bg_color white fetch 4gms, async=0 # hemagglutinin selections select ha, chain A select l130, ha...
8 October 2018
- 17:1517:15, 8 October 2018 diff hist +184 Talk:MAC Install →Package managers: new section current
- 17:0517:05, 8 October 2018 diff hist +51 MAC Install →Pre-compiled: Make Homebrew the recommended package manager current
- 17:0117:01, 8 October 2018 diff hist −97 MAC Install →Pre-compiled: Update Homebrew info to reflect new location of PyMOL formula and no more need for flags in dependencies.
8 March 2018
- 17:1917:19, 8 March 2018 diff hist +16 Isomesh →USAGE: add units for "level" parameter
15 November 2017
- 19:2119:21, 15 November 2017 diff hist +253 Colorblindfriendly →Download the script and run locally: Add a "run from Github" example.
26 October 2017
- 20:0820:08, 26 October 2017 diff hist +291 Colorblindfriendly →Usage: Add instructions for running as dowloaded script.
- 19:5019:50, 26 October 2017 diff hist −1 Colorblindfriendly →Usage: update code samples and use <code> instead of <tt> tags.
- 13:5113:51, 26 October 2017 diff hist −3 Colorblindfriendly →Requirements: update to reflect support for older PyMOLs
- 04:4204:42, 26 October 2017 diff hist −2 m Colorblindfriendly →Usage: fix object name for consistency
- 04:4104:41, 26 October 2017 diff hist +1,281 Colorblindfriendly →Usage: Update usage for version 0.2; Add requirements section.
- 04:1704:17, 26 October 2017 diff hist +107 N File:Colorblindfriendly menu.png Screenshot of the color list menu added to the OpenGL GUI by the colorblindfriendly.py script in PyMOL 2.0. current
- 04:0404:04, 26 October 2017 diff hist −35 Colorblindfriendly →Colors: show 0-255 values instead.
- 02:2502:25, 26 October 2017 diff hist +116 Get Color Indices add reference to Get_color_index
- 02:2302:23, 26 October 2017 diff hist +141 Get color index Add See Also and Categories current
- 02:2102:21, 26 October 2017 diff hist +226 N Get color index Create page
29 July 2017
- 00:2600:26, 29 July 2017 diff hist +5 Selection Algebra →Selection Operator/Modifier Table: fix vertical line display for "or" operator
16 January 2017
- 04:1904:19, 16 January 2017 diff hist +47 PyMOLProbity →Description: add link to repository
14 January 2017
- 17:4817:48, 14 January 2017 diff hist +200 PyMOLProbity →Getting Started: Update GUI section.
- 17:4117:41, 14 January 2017 diff hist +5 PyMOLProbity Add screenshot.
- 17:3917:39, 14 January 2017 diff hist +247 N File:PyMOLProbity GUI.png Screenshot of the "Review Flips" tab of the PyMOLProbity plugin GUI, where flippable side chains in the selected object can be inspected, animated between unflipped (i.e. Reduce-output) and flipped orientations, and selected for future operations. current