msms_surface calculates a molecular surface with MSMS and loads it into PyMOL as a CGO.
Installation
msms_surface is available from the psico package and requires the msms binary.
All dependencies are available from Anaconda Cloud:
conda install -c schrodinger pymol
conda install -c schrodinger pymol-psico
conda install -c bioconda -c speleo3 msms
Usage
msms_surface [ selection [, state [, density [, name
[, atomcolors [, exe [, preserve ]]]]]]]
Arguments
- selection = str: atom selection {default: polymer}
- state = int: object state {default: 1}
- density = float: MSMS surface point density {default: 3}
- name = str: name of CGO object to create
- atomcolors = 0/1: color surface by atom colors {default: 0}
- exe = str: path to msms binary {default: find in $PATH}
- preserve = 0/1: don't ..→
