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Revision as of 18:34, 4 January 2016

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

XML-RPC server

This page describes a custom user implementation of an XML-RPC server.

For PyMOL's built-in server, see RPC.

This server will enable any method in the 'cmd' module to be called remotely, as well as custom methods of the "pymol_interface" class (several examples of which are shown below). Other modules (such as util) could be wrapped using the same trick.

<source lang="python">

from pymol import cmd, util from threading import Thread from SimpleXMLRPCServer import SimpleXMLRPCServer import cPickle import os import re import string

def pymol_startup () :

 print "Loading PyMOL XML-RPC extensions"
 server = pymol_interface()

class pymol_xmlrpc_server (SimpleXMLRPCServer) :

 def __init__ (self, addr, interface) :
   self.interface = interface
   SimpleXMLRPCServer.__init__(self, addr, logRequests=0)
 def _dispatch (self, method, params) :
   if not self.interface.enable_xmlrpc :
     return -1
   result = -1
   func = None
   if  ..→
A Random PyMOL-generated Cover. See Covers.