Get fastastr
Jump to navigation
Jump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
get_fastastr is an API-only function which returns the one-letter amino acid sequence in FASTA format.
Changed in PyMOL 2.2: Sequences per chain
Changed in PyMOL 2.2: Nucleic acid support
PyMOL API
cmd.get_fastastr(string selection='all', int state=-1, int quiet=1)
Example
fetch 1ubq, async=0
print(cmd.get_fastastr('all'))
>1ubq MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV LRLRGG