Difference between revisions of "Category:Uncategorized"
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==Alter key bindings== | ==Alter key bindings== | ||
It's not GUI, but you could simply bind a function key such as F1 to a command: | It's not GUI, but you could simply bind a function key such as F1 to a command: | ||
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set surface_color, level, molecule | set surface_color, level, molecule | ||
</source> | </source> | ||
| + | |||
| + | ==Van der Waals radii== | ||
| + | van der Waals Radii are hard coded in Pymol. | ||
| + | They may be obtained for given atoms from: | ||
| + | <source lang="python"> | ||
| + | iterate (name C), print vdw | ||
| + | </source> | ||
| + | Default values are: | ||
| + | *C : 1.70 | ||
| + | *O : 1.52 | ||
| + | *N : 1.55 | ||
| + | *H : 1.20 | ||
| + | *P : 1.80 | ||
| + | |||
| + | and may be changed with the command alter | ||
Revision as of 04:55, 16 January 2007
Alter key bindings
It's not GUI, but you could simply bind a function key such as F1 to a command:
cmd.set_key('F1',lambda :cmd.show('sticks'))
Coloring Surface with Electrostatic Potential
You have to load the potential data by Delphi or some other program like AMBER version 9:
load sample.pdb, molecule
load sample.delphi, potential
show surface, molecule
ramp_new level, potential, [-7,0,7]
set surface_color, level, molecule
Van der Waals radii
van der Waals Radii are hard coded in Pymol. They may be obtained for given atoms from:
iterate (name C), print vdw
Default values are:
- C : 1.70
- O : 1.52
- N : 1.55
- H : 1.20
- P : 1.80
and may be changed with the command alter
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