Script Categories
User Interface	Objects and Selections	System (OS/Filesystem/Web/etc)
Aa codes Apropos Distancetoatom Dynamic mesh Format bonds Frame slider Get colors Grepset ImmersiveViz Inertia tensor Key Wait Make Figures Mouse modes Movie color fade Movie fade Movit ObjectByArrows ObjectFocus PDB Web Services Script PowerMate Dial OS X Pytms Quickdisplays RUCAP UM-5 Save2traj Save settings Set toggle Spectrumbar Stereo Figures Stereo ray VisLoad	AlphaToAll Annotate v Cluster Count CollapseSel Color Objects Color cbcobj ConnectedCloud Count molecules in selection DistancesRH Expand To Surface FindObjectsNearby FindSurfaceCharge FindSurfaceResidues Find buried waters Findseq Flatten obj GetNamesInSel Get Coordinates I Get Coordinates II Get raw distances Grepsel ListSelection2 List Colors List Secondary Structures List Selection Pairwise distances Removealt Rotkit SaveGroup Save sep SelInside SelectClipped Selection Exists ShowLigandWaters Split Movement Split Object Along Axis Split selection ToGroup Zero residues	FetchLocal FilterByMol Find symbol LoadDir Monitor file continuously Pdbsurvey Pml2py Process All Files In Directory PythonTerminal Read PDB-String Tiff2ccp4 XML-RPC server
Structural Biology	Third Party	Biochemical Scripts
AAindex AngleBetweenHelices Angle between domains AutoMultiFit Average b BbPlane BiologicalUnit BiologicalUnit/Quat Bondpack Cart to frac Ccp4 contact Ccp4 ncont Ccp4 pisa Centroid ColorByRMSD Color By Mutations Color by conservation Colorblindfriendly Colorbydisplacement Consistent View/ Map Inspect Contact Surface CreateSecondaryStructure Cyspka Displacementmap DistancesRH Draw Protein Dimensions Dssp Dssr block DynoPlot Elbow angle FindSurfaceCharge FindSurfaceResidues Helicity check HighlightAlignedSS InterfaceResidues Intra xfit Iterate sses LigAlign Load aln Load new B-factors Mcsalign Measure Distance Motif Msms surface Nmr cnstr PDB plugin Pairwise distances Propka Resicolor plugin RmsdByResidue Rotamer Toggle RotationAxis ShowLigandWaters Show contacts Sidechaincenters Ss Sst Transformations Translate And Measure WriteSS Xfit	Ccp4 contact Ccp4 ncont Ccp4 pisa PoseView PovRay Pymol2glmol RUCAP UM-5 Rasmolify Save Mopac Tiff2ccp4 Transform odb Wfmesh	AAindex Average b Color cbcobj Color h CreateAtom Cyspka DistancesRH Distancetoatom FindSurfaceCharge FindSurfaceResidues Forster distance calculator ListSelection2 Load new B-factors Pairwise distances Polarpairs Propka Pucker Pytms Quickdisplays Resicolor ShowLigandWaters Show aromatics Show charged Show contacts Show hydrophilic Show hydrophobics
Math/Geometry/CGO
Axes BbPlane BiologicalUnit BiologicalUnit/Quat Bounding Box CGO Text Cart to frac Center of mass CgoCircle Cgo arrow Cgo grid Contact Surface Cubes Distancetoatom DrawBoundingBox Draw Protein Dimensions Dump2CGO Ellipsoid Mark center Modevectors Perp maker Plane Wizard Radius of gyration RotationAxis Slerpy SuperSym Supercell Symmetry Axis TransformSelectionByCameraView

Notes

Please let me know what you think about the changes to this page (see this page's Discussion page).
Feel free to add scripts
Feel free to add new categories for your scripts and to the table
See this page's discussion page for script requests

GIT Repository of all our scripts:

git clone git://github.com/jlec/Pymol-script-repo.git

Subcategories

This category has the following 7 subcategories, out of 7 total.

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ThirdParty Scripts

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UI Scripts

Pages in category "Script Library"

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VisLoad

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Zero residues

Category:Script Library

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