Difference between revisions of "Category:ObjSel Scripts"

From PyMOLWiki
Jump to navigation Jump to search
(Created page with '* ConnectedCloud -- Find connected clouds of objects in PyMOL * Zero_residues -- Renumber residues such that the first residue is 0. Useful for alignments. * [[List Sele...')
 
 
(3 intermediate revisions by one other user not shown)
Line 1: Line 1:
−
* [[ConnectedCloud]] -- Find connected clouds of objects in PyMOL
+
* [[ConnectedCloud]]  
−
* [[Zero_residues]] -- Renumber residues such that the first residue is 0. Useful for alignments.
+
::Find connected clouds of objects in PyMOL
−
* [[List Selection]] -- Prints a list of all residues in a selection (both Python and .pml).
+
* [[Color Objects]]
−
* [[List Colors]] -- Lists the color of all residues in a selection (both Python and .pml).
+
:: Colors all objects differently (Python script).
−
* [[List Secondary Structures]] -- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
+
* [[FindSeq]]
−
* [[Selection Exists]] -- Python method that returns true if a selection of a given name exists.
+
:: Find sequence or regular expression of amino acids in a protein.
−
* [[Color Objects]] -- Colors all objects differently (Python script).
+
* [[Get Coordinates I]]
−
* [[Get Coordinates I]] -- Retrieves atom coordinates as Python objects.
+
:: Retrieves atom coordinates as Python objects.
−
* [[Get Coordinates II]] -- Retrieves atom coordinates as Python array (list object).
+
* [[Get Coordinates II]]
−
* [[grepsel]] -- Make named selections using regular expressions (protein sequence).
+
:: Retrieves atom coordinates as Python array (list object).
−
* [[Split Movement]] -- Moves two parts of one object into different directions.
+
* [[grepsel]]
 +
:: Make named selections using regular expressions (protein sequence).
 +
* [[List Selection]]
 +
:: Prints a list of all residues in a selection (both Python and .pml).
 +
* [[List Colors]]
 +
:: Lists the color of all residues in a selection (both Python and .pml).
 +
* [[List Secondary Structures]]
 +
:: Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
 +
* [[Selection Exists]]
 +
:: Python method that returns true if a selection of a given name exists.
 +
* [[Split Movement]]
 +
:: Moves two parts of one object into different directions.
 +
* [[Split Object Along Axis]]
 +
:: Splits an object into 2 pieces along a given axis.
 +
* [[toGroup]]
 +
:: Convert a multistate object into a group of single state objects.
 +
* [[Zero_residues]]
 +
:: Renumber residues such that the first residue is 0. Useful for alignments.
  
 
[[Category:Script_Library]]
 
[[Category:Script_Library]]

Latest revision as of 13:17, 2 April 2010

Find connected clouds of objects in PyMOL
Colors all objects differently (Python script).
Find sequence or regular expression of amino acids in a protein.
Retrieves atom coordinates as Python objects.
Retrieves atom coordinates as Python array (list object).
Make named selections using regular expressions (protein sequence).
Prints a list of all residues in a selection (both Python and .pml).
Lists the color of all residues in a selection (both Python and .pml).
Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
Python method that returns true if a selection of a given name exists.
Moves two parts of one object into different directions.
Splits an object into 2 pieces along a given axis.
Convert a multistate object into a group of single state objects.
Renumber residues such that the first residue is 0. Useful for alignments.
Retrieved from "http://pymolwiki.org/index.php?title=Category:ObjSel_Scripts&oldid=8152"