Difference between revisions of "Category:ObjSel Scripts"
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| − | * [[ConnectedCloud]] | + | * [[ConnectedCloud]] — Find connected clouds of objects in PyMOL |
| − | * [[Color Objects]] | + | * [[Color Objects]] — Colors all objects differently (Python script). |
| − | * [[FindSeq]] | + | * [[FindSeq]] — Find sequence or regular expression of amino acids in a protein. |
| − | * [[Get Coordinates I]] | + | * [[Get Coordinates I]] — Retrieves atom coordinates as Python objects. |
| − | * [[Get Coordinates II]] | + | * [[Get Coordinates II]] — Retrieves atom coordinates as Python array (list object). |
| − | * [[grepsel]] | + | * [[grepsel]] — Make named selections using regular expressions (protein sequence). |
| − | * [[List Selection]] | + | * [[List Selection]] — Prints a list of all residues in a selection (both Python and .pml). |
| − | * [[List Colors]] | + | * [[List Colors]] — Lists the color of all residues in a selection (both Python and .pml). |
| − | * [[List Secondary Structures]] | + | * [[List Secondary Structures]] — Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS'). |
| − | * [[Selection Exists]] | + | * [[Selection Exists]] — Python method that returns true if a selection of a given name exists. |
| − | * [[Split Movement]] | + | * [[Split Movement]] — Moves two parts of one object into different directions. |
| − | * [[Zero_residues]] | + | * [[toGroup]] — Convert a multistate object into a group of single state objects. |
| + | * [[Zero_residues]] — Renumber residues such that the first residue is 0. Useful for alignments. | ||
[[Category:Script_Library]] | [[Category:Script_Library]] | ||
Revision as of 18:27, 22 May 2009
- ConnectedCloud — Find connected clouds of objects in PyMOL
- Color Objects — Colors all objects differently (Python script).
- FindSeq — Find sequence or regular expression of amino acids in a protein.
- Get Coordinates I — Retrieves atom coordinates as Python objects.
- Get Coordinates II — Retrieves atom coordinates as Python array (list object).
- grepsel — Make named selections using regular expressions (protein sequence).
- List Selection — Prints a list of all residues in a selection (both Python and .pml).
- List Colors — Lists the color of all residues in a selection (both Python and .pml).
- List Secondary Structures — Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
- Selection Exists — Python method that returns true if a selection of a given name exists.
- Split Movement — Moves two parts of one object into different directions.
- toGroup — Convert a multistate object into a group of single state objects.
- Zero_residues — Renumber residues such that the first residue is 0. Useful for alignments.
Pages in category "ObjSel Scripts"
The following 39 pages are in this category, out of 39 total.