Editing Dockingpie (section)

== References ==
[1] DeLano, WL. (2002). “The PyMOL Molecular Graphics System on World Wide Web.” CCP4 Newsletter On Protein Crystallography

[2] Ruiz-Carmona, S., Alvarez-Garcia, D., Foloppe, N., Garmendia-Doval, A. B., Juhos, S., Schmidtke, P., Barril, X., Hubbard, R. E., & Morley, S. D. (2014). rDock: a fast, versatile and open source program for docking ligands to proteins and nucleic acids. PLoS computational biology, 10(4), e1003571. https://doi.org/10.1371/journal.pcbi.1003571

[3] O. Trott, A. J. Olson, AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading, Journal of Computational Chemistry 31 (2010) 455-461

[4] Koes, David Ryan et al. “Lessons learned in empirical scoring with smina from the CSAR 2011 benchmarking exercise.”Journal of chemical information and modeling vol. 53,8 (2013): 1893-904. doi:10.1021/ci300604z

[5] Ravindranath PA, Forli S, Goodsell DS, Olson AJ, Sanner MF. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility. PLoS Comput Biol. 2015;11(12):e1004586. Published 2015 Dec 2. doi:10.1371/journal.pcbi.1004586

[6] Morris, G. M., Huey, R., Lindstrom, W., Sanner, M. F., Belew, R. K., Goodsell, D. S., & Olson, A. J. (2009). AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. Journal of Computational Chemistry, 30(16), 2785–2791.

[7] O'Boyle, N.M., Banck, M., James, C.A. et al. Open Babel: An open chemical toolbox. J Cheminform 3, 33 (2011). https://doi.org/10.1186/1758-2946-3-33

[8] Meli, R., Biggin, P.C. spyrmsd: symmetry-corrected RMSD calculations in Python. J Cheminform 12, 49 (2020). https://doi.org/10.1186/s13321-020-00455-2

[9] https://sourceforge.net/projects/sdsorter/

[10] Anaconda Software Distribution. (2020). Anaconda Documentation. Anaconda Inc. Retrieved from https://docs.anaconda.com/

[[Category:Plugins]]