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== Example 2 - starting with two components in separate files == <source lang="python"> # load components separately load my_ligand.pdb load my_target.pdb # get hydrogens onto everything (NOTE: must have valid valences on the ligand...) h_add # make sure all atoms including HETATM within an object occlude one another but ignore solvent flag ignore, none flag ignore, solvent # use solvent-accessible surface with high sampling density set dot_solvent, 1 set dot_density, 3 # measure the components individually ligand_area=cmd.get_area("my_ligand") target_area=cmd.get_area("my_target") # create the complex create my_complex, my_ligand my_target # measure the complex complex_area=cmd.get_area("my_complex") # now print results print ligand_area print target_area print complex_area print (ligand_area + target_area) - complex_area </source>
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