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=== Windows/Cygwin === * Download and install the latest version of Cygwin including appropriate code development packages. * Download, compile, and install the latest version of GROMACS 2016.3 under Cygwin. Follow the standard compilation, installation and testing instructions to build, compile and install GROMACS 2016.3 under Cygwin. For example: % cd gromacs-2016.3 % mkdir build % cmake .. -DBUILD_SHARED_LIBS=off -DGMX_BUILD_OWN_FFTW=ON -DCMAKE_INSTALL_PREFIX=/cygdrive/c/<YOUR_GROMACS_ROOT> % make >& make.log % make install >& make.install.log * Test GROMACS from Cywin command line. * Download and install 64 bit PyMOL 1.8.2.0, which comes with Python 2.7.9. * Test PyMOL. * Update PATH environment variable on Windows to include the following bin directories corresponding to GROMACS and Cygwin: C:\<YOUR_GROMACS_ROOT>\bin C:\<YOUR_CYGWIN_PATH>\bin * Install the GROMACS plugin following standard PyMOL instructions. Download latest plugin version from link: https://github.com/makson96/Dynamics/archive/master.zip and unpack it. Run PyMOL. On the top Menu choose Plugin->Manage Plugins->Install... Then choose pymol_plugin_dynamics.py file. After installation restart PyMOL
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