Jump to content
Main menu
Main menu
move to sidebar
hide
Navigation
Main page
Recent changes
Random page
Help
Special pages
SBGrid Resources
SBGrid Consortium
SBGrid Data Bank
Software Webinars
PyMOL Webinar
PyMOL Wiki
Search
Search
Appearance
Create account
Log in
Personal tools
Create account
Log in
Pages for logged out editors
learn more
Contributions
Talk
Editing
Elbow angle
(section)
Page
Discussion
English
Read
Edit
View history
Tools
Tools
move to sidebar
hide
Actions
Read
Edit
View history
General
What links here
Related changes
Page information
Appearance
move to sidebar
hide
Warning:
You are not logged in. Your IP address will be publicly visible if you make any edits. If you
log in
or
create an account
, your edits will be attributed to your username, along with other benefits.
Anti-spam check. Do
not
fill this in!
==Implementation== The elbow angle is the angle between the pseudo-twofold axes between the light and heavy chain variable and constant domains, respectively. The rotation matrix to superpose VL onto VH and CL onto CH are calculated and the vectors corresponding to the rotation axes are determined (using Christoph Gohlke's [[transformations|transformations.py]]). The elbow angle is the obtuse angle obtained by taking the arccos of the dot product of the two vectors. For consistency, the elbow angle is reported as less than 180° when the cross product of the Variable and Constant domain rotation axis vectors ( '''V''' ⨯ '''C''' ) is a vector pointing the same direction as that from the limit_h residue alpha carbon atom to the limit_l alpha carbon atom. [[Category:Script_Library]] [[Category:Structural_Biology_Scripts]] [[Category:Pymol-script-repo]]
Summary:
Please note that all contributions to PyMOL Wiki are considered to be released under the GNU Free Documentation License 1.2 (see
PyMOL Wiki:Copyrights
for details). If you do not want your writing to be edited mercilessly and redistributed at will, then do not submit it here.
You are also promising us that you wrote this yourself, or copied it from a public domain or similar free resource.
Do not submit copyrighted work without permission!
Cancel
Editing help
(opens in new window)
Search
Search
Editing
Elbow angle
(section)
Add topic