Editing Colorbydisplacement (section)

== Bug in code ==
A bug in the boolean operator of the spectrum command has been found. This versions work for version 1.3 Educational product. <br>
For other versions of pymol, try to change (comment/uncomment) the '''cmd.spectrum''' line.
The other spectrum line works for Open-Source PyMOL 1.2r3pre, Incentive product

=== Examples ===
<syntaxhighlight lang="python">
ColorByDisplacementAll O5NT, C5NT, super1=resi 26-355, super2=resi 26-355, doColor=t, doAlign=t

ColorByDisplacementAll O5NT, C5NT, super1=resi 26-355, super2=resi 26-355, doColor=t, doAlign=t, AlignedWhite='no'
</syntaxhighlight>

<gallery heights="240px" widths="340px">
Image:ColorByDisplacement-All-1.png|ColorByDisplacementAll used on 1HP1 and 1HPU aligned and colored by distance displacement.
Image:ColorByDisplacement-All-2.png|ColorByDisplacementAll used on 1HP1 and 1HPU aligned and colored by distance displacement.
</gallery>
Dark blue is low displacement, higher displacements are in orange/yellow/red. <br>
Residues used for alignment is colored white. Can be turned off in top of algorithm.
Residues not in both pdb files is colored black