Difference between revisions of "Super"
Jump to navigation
Jump to search
| Line 4: | Line 4: | ||
[[Category:Structure_Alignment|Super]] | [[Category:Structure_Alignment|Super]] | ||
| − | === Algorithm Details | + | === Algorithm Details === |
'''super''' does a BLAST-like BLOSUM62-weighted dynamic programming sequence alignment followed by a series of refinement cycles intended to improve the fit by eliminating pairing with high relative variability (e.g. >2 standard deviations from the cycle's mean deviance). Next, it does a sequence-independent structure-based dynamic programming alignment followed by that same 3D refinement strategy. | '''super''' does a BLAST-like BLOSUM62-weighted dynamic programming sequence alignment followed by a series of refinement cycles intended to improve the fit by eliminating pairing with high relative variability (e.g. >2 standard deviations from the cycle's mean deviance). Next, it does a sequence-independent structure-based dynamic programming alignment followed by that same 3D refinement strategy. | ||
Revision as of 09:21, 28 January 2008
Overview
super aligns two selections. super is more robust and accurate than align. For syntax, see align.
Algorithm Details
super does a BLAST-like BLOSUM62-weighted dynamic programming sequence alignment followed by a series of refinement cycles intended to improve the fit by eliminating pairing with high relative variability (e.g. >2 standard deviations from the cycle's mean deviance). Next, it does a sequence-independent structure-based dynamic programming alignment followed by that same 3D refinement strategy.