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Revision as of 10:57, 20 April 2016 by Speleo3 (talk | contribs) (PyMOL v1.8.2)
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News & Updates
Official Release PyMOL v1.8.2 has been released on April 20, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Dssp

Included in psico
This command or function is available from psico, which is a PyMOL extension.

Module psico.editing

dssp is a wrapper for the popular DSSP program, which computes secondary structure. The command updates PyMOL's ss atom property.

Installation

The dssp command is available from the psico package and requires the dssp binary (or mkdssp, dsspcmbi, dssp-2).

All dependencies are available from Anaconda Cloud:

conda install -c schrodinger pymol
conda install -c schrodinger pymol-psico
conda install -c salilab -c speleo3 dssp 

Usage

dssp [ selection [, exe [, raw [, state ]]]]

Arguments

  • selection = str: atom selection {default: all}
  • exe = str: path to dssp binary {default: search $PATH for dsspcmbi, dssp, dssp-2, mkdssp}
  • raw = str: atom property to assign the dssp secondary structure type to. This type will also be translated to PyMOL's H/S/L types and assiged to the ss property {default: }
  • ..→
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