| 3D using Geforce
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PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards [1].
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| New Plugin
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GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
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| New Software
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CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
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| New Script
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cgo_arrow draws an arrow between two picked atoms.
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| Tips & Tricks
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Instructions for generating movie PDFs using .mpg movies from PyMOL.
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| New Script
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Cluster Count calculates statistics on the B-values for all atoms in the selected object.
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| New Script
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Make Figures aids you in making publication quality figures for the currently displayed scene.
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| New Script
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Distances RH
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| PyMOL on the iPad
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PyMOL is now available on the iPad as a free download from the AppStore. See pymol.org/mobile for more info.
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| OS X Compatibility
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Mac OS X 10.8 doesn't ship with X11. But, you can get the libraries here X11 Libraries.
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| New Script
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select_sites can set author/paper selections according to SITE annotation in pdb file
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| New Script
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b2transparency can set surface transparency based on atom b-factor
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| New Extension
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psico is a python module which extends PyMOL with many commands
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| New Script
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uniprot_features makes named selections for sequence annotations from uniprot
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| New Plugin
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Gyration_tensor Calculates chain-wise gyration tensor of a protein.
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| New Script
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set_phipsi can set phi/psi angles for all residues in a selection
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| New Script
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dehydron A plugin to calculate dehydrons and display them onto the protein structure. A dehydron is a main chain hydrogen bond incompletely shielded from water attack.
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| New Script
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pymol2glmol is script to export a scene in pymol to a webpage for GLmol. GLmol is a molecular viewer for Web browsers written in WebGL/Javascript. Like web Jmol, but MUCH faster. Try it out!
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| New Script
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cyspka is an experimental surface cysteine pKa predictor.
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| New Plugin
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Contact_Map_Visualizer visualize residues corresponding to the contact map. See CMPyMOL.
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| New Script
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spectrum_states colors states of multi-state object
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| New Script
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TMalign is a wrapper for the TMalign program
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| Gallery Updates
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The gallery has been updated to include a few new ideas and scripts for rendering
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| New Script
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save_settings can dump all changed settings to a file
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| Tips & Tricks
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Instructions for generating 3D PDFs using PyMOL.
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| Wiki Update
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Wiki has been updated. Please report any problems to the sysops.
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| New Scripts
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Create objects for each molecule or chain in selection with split_object and split_chains
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| New Script
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Rotkit: is a collection of usefull scripts to place your dye/molecule where you want. It includes a very handy, rotation around line, function.
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| New Script
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Forster-distance-calculator: Can be used as a pymol-python shortcut to calculate the Förster distance between dyes from different companies. Useful, if the user have pymol installed, but not python. This script is meant as a tool to finding the right dyes, when labelling suitable positions for the site-directed cysteine mutants. See DisplacementMap.
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| New Script
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propka: Fetches the pka values for your protein from the propka server. propka generates a pymol command file that make pka atoms, color and label them according to your protein. Inspection is made easy by grouping the pka atoms in the pymol menu.
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| Older News
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See Older News.
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