Uniprot features

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Type Python Module
Download uniprot_features.py
Author(s) Thomas Holder
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

uniprot_features fetches the sequence annotation (features) from uniprot.org and create named selections for each feature.

Requires residue numbering (resi) to match uniprot sequence!

Usage

uniprot_features uniprot_id [, selection [, withss [, prefix ]]]

Example

Show the active site of human pepsin A:

fetch 1flh, async=0
 
# fix residue numbering to match uniprot sequence
alter all, resi=resv+62
 
# create selections
uniprot_features PEPA4_HUMAN
 
# show sticks for active site
as cartoon
set cartoon_side_chain_helper
show sticks, feature_active_site
zoom feature_active_site

See also

select_sites

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