Uniprot features
From PyMOLWiki
| Type | Python Module |
|---|---|
| Download | uniprot_features.py |
| Author(s) | Thomas Holder |
| License | BSD-2-Clause |
| This code has been put under version control in the project Pymol-script-repo | |
uniprot_features fetches the sequence annotation (features) from uniprot.org and create named selections for each feature.
Requires residue numbering (resi) to match uniprot sequence!
Usage
uniprot_features uniprot_id [, selection [, withss [, prefix ]]]
Example
Show the active site of human pepsin A:
fetch 1flh, async=0 # fix residue numbering to match uniprot sequence alter all, resi=resv+62 # create selections uniprot_features PEPA4_HUMAN # show sticks for active site as cartoon set cartoon_side_chain_helper show sticks, feature_active_site zoom feature_active_site
