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0.99beta11	3DNA	APBS
Abort	About	Advanced Coloring
Advanced Scripting	Alias	Align
All states	Alter	Alter State
Ambient	Antialias	Apropos
As	Async builds	Atom name wildcard
Attach	Auto zoom	Autodock Plugin
Axes	Backface cull	Backward
Ball and Stick	Bg Color	Bg rgb
Bond	Bounding Box	Button
CCTBX	CGO Text	CMYK
Capture	Cartoon	Cartoon Helix Settings
Cartoon color	Cartoon cylindrical helices	Cartoon discrete colors
Cartoon dumbbell length	Cartoon dumbbell radius	Cartoon dumbbell width
Cartoon fancy helices	Cartoon fancy sheets	Cartoon flat cycles
Cartoon flat sheets	Cartoon helix radius	Cartoon highlight color
Cartoon nucleic acid color	Cartoon nucleic acid mode	Cartoon oval length
Cartoon oval quality	Cartoon oval width	Cartoon rect length
Cartoon rect width	Cartoon ring mode	Cartoon ring transparency
Cartoon round helices	Cartoon sampling	Cartoon side chain helper
Cartoon smooth loops	Cartoon transparency	Caver
Cavity cull	Cd	Cealign
Cell	Center	Center Of Mass
CheatSheet	Ciewport	Clip
Cls	Cmd.center	CmdScript copy
Cmd abort	Cmd alias	Cmd alter
Cmd alter state	Cmd attach	Cmd backward
Cmd bg color	Cmd bond	Cmd button
Cmd center	Cmd clip	Cmd cls
Cmd copy	Cmd count atoms	Cmd count frames
Cmd count states	Cmd cycle valence	Cmd delete
Cmd deprotect	Cmd deselect	Cmd disable
Cmd distance	Cmd dss	Cmd edit
Cmd edit keys	Cmd enable	Cmd ending
Cmd extend	Cmd fit	Cmd fork
Cmd forward	Cmd fragment	Cmd frame
Cmd full screen	Cmd fuse	Cmd get angle
Cmd get dihedral	Cmd get distance	Cmd get extent
Cmd get names	Cmd get pdbstr	Cmd get symmetry
Cmd get title	Cmd get type	Cmd get view
Cmd h add	Cmd id atom	Cmd identify
Cmd index	Cmd indicate	Cmd intra fit
Cmd intra rms	Cmd intra rms cur	Cmd isodot
Cmd isolevel	Cmd isomesh	Cmd isosurface
Cmd iterate	Cmd iterate state	Cmd label
Cmd load	Cmd load model	Cmd load traj
Cmd ls	Cmd map double	Cmd map set border
Cmd mappend	Cmd mask	Cmd mclear
Cmd mdo	Cmd mdump	Cmd mem
Cmd meter reset	Cmd middle	Cmd mmatrix
Cmd move	Cmd mplay	Cmd mpng
Cmd mset	Cmd mstop	Cmd order
Cmd orient	Cmd pair fit	Cmd png
Cmd protect	Cmd push undo	Cmd pwd
Cmd ray	Cmd read molstr	Cmd read pdbstr
Cmd rebuild	Cmd recolor	Cmd redo
Cmd refresh	Cmd reinitialize	Cmd remove
Cmd remove picked	Cmd rename	Cmd replace
Cmd reset	Cmd rms	Cmd rms cur
Cmd rock	Cmd rotate	Cmd run
Cmd save	Cmd scene	Cmd select
Cmd set	Cmd set colour	Cmd set geometry
Cmd set key	Cmd set name	Cmd set symmetry
Cmd set title	Cmd set view	Cmd torsion
Cmd translate	Cmd turn	Cmd unbond
Cmd undo	Cmd unmask	Cmd unpick
Cmd unset	Cmd update	Cmd view
Cmd viewport	Cmd wizard	Cmd zoom
Cmura	Color	Color Objects
Color Values	Colorama	Command Line Options
Config Mouse	Copy	Count Atoms
Count Frames	Count States	Create
CreateSecondaryStructure	Current events	Cycle Valence
Cycle valence	DYNMAP	Dash Gap
Dash Length	Dash Radius	Dash Round Ends
Dash radius	Delete	Deprotect
Depth cue	Deselect	Disable
Display CCP4 Maps	Displaying Biochemical Properties	Distance
Dot radius	Dot width	Dots
Draw	Dss	Dunbrack Rotamers
DynoPlot	EMovie	EZ-Viz
Edit	Edit Keys	Editing atoms
Editing set dihedral	Ellipsoid	Ellipsoids
Enable	Ending	Example Scripts
Examples of cartoon ring and cartoon ladder settings	Examples of nucleic acid cartoons	Expand To Surface
Extend	Extensions	Extract
Feedback	Fetch	Field Of View
Fit	Fog	Fog start
Fork	Forward	Fragment
Frame	Full Screen	Fuse
Gallery	Get Angle	Get Area
Get Color Indices	Get Coordinates I	Get Coordinates II
Get Dihedral	Get Distance	Get Extent
Get Model	Get Names	Get Pdbstr
Get Symmetry	Get Title	Get Type
Get Version	Get View	Grepsel
Grepset	Grid mode	Grid slot
Group	Gsoc2008	H add
Half bonds	Hardware Options	Hash max
Helicity check	Hide	Homology Modeling
Id Atom	Ideas	Identify
ImmersiveViz	Index	Indicate
Internal Gui	Internal prompt	Intra Fit
Intra Rms	Intra Rms Cur	Invert
Isodot	Isolevel	Isomesh
Isosurface	Iterate	Iterate State
Iterate sses	Kabsch	Key Wait
Label	Label color	Label font id
Label outline color	Label position	Label shadow mode
Label size	Launching From a Script	Launching PyMOL
Light count	Line smooth	Lines
Linux Install	Linux XFree86 Configuration	List Colors
List Secondary Structures	List Selection	Load
Load Model	Load Traj	Ls
MAC Install	MacOSX-specific .pymolrc file	Main Page
Making Movies	Map Double	Map Set Border
Map Trim	Mappend	Mask
Mclear	Mdo	Mdump
Measure Distance	Mem	Mesh
Mesh color	Mesh lighting	Mesh mode
Mesh quality	Mesh type	Mesh width
Meter Reset	Middle	Min mesh spacing
Mmatrix	Modeling and Editing Structures	Molecular Sculpting
Monitors Hardware Options	Motif	Mouse Controls
Mouse Settings	Mouse modes	Move
Movie loop	Movit	Mplay
Mpng	Mset	Mstop
Mutagenesis	Named Atom Selections	NsSNP Loader
Nuccyl	Nucleic Acid Sequence	Nucleic acid cartoon settings
O	Objects and Selections	Older News
Order	Orient	Origin
Orthoscopic	Overview of nucleic acid cartoons	PDB Entry Search
PDB Index Search	PDB Loader Service	Pair Fit
Pdb Conect All	Pdb retain ids	Pdbsurvey
Peptide Sequence	Perp Maker	Pickable
Plane Wizard	Plugin nsSNP Loader	Plugins Tutorial
Png	PovRay	PowerMate Dial OS X
Practical Pymol for Beginners	ProMOL	Process All Files In Directory
Property Selectors	Protect	Proxy Config
Pseudoatom	Publication Quality Images	Push Undo
Pwd	PyMOL	Python
PythonTerminal	Python Integration	Quit
Rasmol	Rasmolify	Ray
Ray Shadows	Ray Trace Fog	Ray Tracing
Ray opaque background	Ray orthoscopic	Ray shadow
Ray shadows	Ray texture	Ray trace fog
Ray trace frames	Read Molstr	Read PDB-String
Read Pdbstr	Read pdbstr	Rebuild
Recolor	Redo	Reflect
Refresh	Reinitialize	Remove
Remove Picked	Rename	Replace
Reset	Resicolor	Resicolor plugin
Retain order	Rewind	Ribbon
Ribbon Width	Ribbon color	Ribbon sampling
Ribbon smooth	Ribbon width	Rms
Rms Cur	Rock	Rotamer Toggle
Rotate	Run	S2S
SURFNET	San Francisco Bay Area	Save
Scene	Scenes	Script Tutorial
Scripting	Search Pymol source	Search pymol-users mailing list
Select	Selection-expressions	Selection Algebra
Selection Exists	Selection Macros	Selection width
Seq view	Seq view format	Seq view label color
Seq view label mode	Seq view location	Seq view overlay
Set	Set Color	Set Colour
Set Geometry	Set Key	Set Name
Set Symmetry	Set Title	Set View
Set dihedral	Settings	Shininess
Show	Show NMR constrains	Show aromatics
Show charged	Show hydrophilic	Show hydrophobics
Simple Scripting	Single-word Selectors	Slerpy
Software Codecs	Sort	Spec reflect
Sphere color	Sphere mode	Sphere quality
Sphere scale	Sphere transparency	Spheres
Split Movement	Split States	Ss
Stereo	Stereo Figures	Stereo Mode
Stereo Ray	Stereo angle	Stick ball
Stick ball ratio	Stick color	Stick nub
Stick radius	Stick transparency	Sticks
Super	Surface	Surface carve cutoff
Surface carve normal cutoff	Surface carve selection	Surface color
Surface mode	Surface type	Surfaces and Voids
Symmetry Axis	Sync	System
TCONCOORD	TODO	TOPTOC
Torsion	TransformSelectionByCameraView	Transform odb
Transform odb.py	Transform selection	Translate
Translate And Measure	Transparency	Turn
Two sided lighting	Unbond	Undo
Unmask	Unpick	Unset
Update	Util.mroll	Valence
View	Viewport	Virtual trackball
WFMesh	Window	Windows Install
Wizard	WriteSS	XFree86 Configuration
Zero residues	Zoom