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Revision as of 21:33, 15 July 2022

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Stereo

The stereo command sets the current stereo mode.

Stereo mode is a convenient way to "see" 3D with two images from slightly different angles.

There are corresponding stereo and stereo_mode settings which are controlled by the stereo command, so you don't need to set them directly.

Usage

stereo [ toggle ]

Valid values for the toggle argument are: on, swap, off, quadbuffer, crosseye, walleye, geowall, sidebyside, byrow, bycolumn, checkerboard, custom, anaglyph, dynamic, clonedynamic (see also stereo_mode)

Example of 1ESR shown in cross-eyed stereo

Example

fetch 1ESR, async=0
as cartoon
set cartoon_smooth_loops
spectrum
bg white
stereo crosseye

See Also

A Random PyMOL-generated Cover. See Covers.