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News & Updates Official Release PyMOL v2.5 has been released on May 10, 2021. Python 3 New Python 3 compatibility guide for scripts and plugins POSF New PyMOL fellows announced for 2018-2019 Tutorial Plugins Tutorial updated for PyQt5 New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... RmsdByResidue Type Python Script Download Author(s) Zhenting Gao License Introduction RMSD between two structures of the same protein. The concept is similar as RMSF between two structures. programming Platform PyMOL rms_cur Feature Output RMSD of all atoms of each residues pairs Least RMSD of all atoms of each residues pairs symmetry of Phe, Tyr, His, Asp, Glu, Gln, Asn, Arg, Leu and Val needs to be considered switch the atom name and then calculate the RMSD again Selected least RMSD of a residue pair for report RMSD of backbone atoms of each residues pairs RMSD of C alpha atoms of each residues pairs With defined residues pairs Residue pair can be limited to within binding site Workflow Read reference and target pdb files two structures should be superposed before using this function Note Python PyMOL Clean attributes otherwise rms_cur will fail How to get residue name? residue name, residue index ..→

A Random PyMOL-generated Cover. See Covers.